Author Archives: rcf8

Release 3

June 8th, 2010 | Posted by rcf8 in Uncategorized | WebRelease - (Comments Off on Release 3)

Complete web site redesign.

Gene/region based study and marker search.

Phenotype ontology browser and term matching.

Improved navigation and bookmarkable tabs.

Exportable search and report data as feeds or files.

New HGVbaseG2P web site released

June 7th, 2010 | Posted by rcf8 in News | Uncategorized - (Comments Off on New HGVbaseG2P web site released)

HGVbaseG2P version 3 has been redesigned for advanced integration of association datasets.
New features include:

  • Complete revamp making it easier to identify Studies and Markers of interest.
  • Central search which identifies whether you are searching for a region, gene, keyword or phenotype term.
  • Gene/region search which identifies association studies which used significant markers in your selected region.
  • All pages and tabs can now be bookmarked, allowing you to return to or share pages of interest easily.
  • Phenotype tree browser (based on MeSH) for retrieving Studies linked to one or more categories of Phenotype.
  • Phenotype term search which will find Studies matching different variations on a term.

Release 5

December 18th, 2009 | Posted by rcf8 in StudyRelease | Uncategorized - (Comments Off on Release 5)

60 new GWA studies from the GWAS catalog
7 additional GWA studies added using marker data from supplementary data

New release of HGVbaseG2P Study database

December 18th, 2009 | Posted by rcf8 in News | Uncategorized - (Comments Off on New release of HGVbaseG2P Study database)

This study database release (v4) provides 60 additional GWAS studies and 4 GWAS updated studies that can be viewed in the HGVbaseG2P browser. 53 GWAS studies were imported from:

1. NHGRI GWAS Catalog
2. Seven other publications

Four studies (HGVST27, HGVST58, HGVST83 and HGVST185) were updated with additional marker information.

HGMD data now available through HGVbaseG2P

December 18th, 2009 | Posted by rcf8 in News | Uncategorized - (Comments Off on HGMD data now available through HGVbaseG2P)

The Human Gene Mutation Database (HGMD) contains published mutations responsible for human inherited disease. HGMD data are visible in the browser, within the region view.

* HGMD Web Site
* HGMD Disclaimer

Release 2.2

September 4th, 2009 | Posted by rcf8 in Uncategorized | WebRelease - (Comments Off on Release 2.2)

New marker reports containing p-value association data from single studies and/or user selected studies

Release 3

August 19th, 2009 | Posted by rcf8 in StudyRelease | Uncategorized - (Comments Off on Release 3)

Over 100 GWAS studies added from the NHGRI GWAS catalog and the Open Access Database of genome-wide association results

Release 2.1

July 17th, 2009 | Posted by rcf8 in Uncategorized | WebRelease - (Comments Off on Release 2.1)

Non-cosmetic web site refinements including faster search

Release 4

July 1st, 2009 | Posted by rcf8 in StudyRelease | Uncategorized - (Comments Off on Release 4)

Additional 186 GWAS studies from the GWAS catalog

Release of 186 additional GWAS studies

July 1st, 2009 | Posted by rcf8 in News | Uncategorized - (Comments Off on Release of 186 additional GWAS studies)

Release of 186 additional GWAS studies from:

1. NHGRI GWAS Catalogue
2. An Open Access Database of Genome-wide Association Results

This brings the number of GWAS studies available in HGVbaseG2P to 305 with 291 available for analysis in the HGVbaseG2P browser.