Author Archives: rcf8

Semantic Web/Linked Data support added

April 2nd, 2012 | Posted by rcf8 in News | Uncategorized - (Comments Off on Semantic Web/Linked Data support added)

GWAS Central now provides data in Semantic Web and Linked Data compatible formats through:

  • Individual markers, phenotypes and results which now output RDF and Turtle formats that connect to Linked Data resources.
  • Nanopublications: a  Semantic Web resource using named graphs, and contain key results for each dataset outputs N-Quads format. These follow the nanopublication proposals suggested here.
  • The construction of a triple-store with a SPARQL server available at http://fuseki.gwascentral.org.

We are in the process of updating the Web Services section of our help with more information.

Release 7

April 2nd, 2012 | Posted by rcf8 in Uncategorized | WebRelease - (Comments Off on Release 7)

Semantic Web and Linked Data support added:

  • Individual markers, phenotypes and results now output RDF and Turtle formats.
  • Nanopublications:  S/W resource using named graphs, and contain key results for each dataset outputs N-Quads format. Follows the nanopublication proposals suggested here.
  • Construction of a TripleStore with a SPARQL server at http://fuseki.gwascentral.org

Updated Data Sharing Statement

April 2nd, 2012 | Posted by rcf8 in News | Uncategorized - (Comments Off on Updated Data Sharing Statement)

GWAS Central is committed to data sharing wherever possible, to maximise the value and scientific impact of data. However, this has to balanced against the risk of identifying research subjects (see Homer et al: http://dx.doi.org/10.1371/journal.pgen.1000167). Additionally, data in GWAS Central are curated and integrated, making them unique as an asset. For these reasons, our policy on data sharing is that we openly provide large amounts of data (up to 1,000 markers and associated data per download), in a range of displays and formats, sufficient for the needs of most researchers. Complete downloads of the complete database, or very large segments of it, are not openly allowed, but can be discussed in special cases that do not involve competing projects or commercial use of the data.

Release 10

March 9th, 2012 | Posted by rcf8 in StudyRelease | Uncategorized - (Comments Off on Release 10)

300 Studies (HGVST708-HGVST1012) from NHGRI Catalog and other sources.
Now contains study data from 1,008 studies (34,131,526 p-values).

Release 6

March 9th, 2012 | Posted by rcf8 in Uncategorized | WebRelease - (Comments Off on Release 6)

Complete site revamp including more intuitive search and Browser functions.
GWAS Mart data mining tool integrated into site through canned queries and GWAS Mart section.
Updated MeSH and HPO terms to most recent.
Human genome build 37 support through new versions of HGMD data, UCSC chromosome information and genes (hg19), lifting over HapMap data and updating the GWAS Central marker catalogue and association database.

Release 18

February 21st, 2012 | Posted by rcf8 in MarkerRelease | Uncategorized - (Comments Off on Release 18)

62.3 million total marker records (update to dbSNP b135)

New version of GWAS Central with improved news, help and information pages

March 16th, 2011 | Posted by rcf8 in News | Uncategorized - (Comments Off on New version of GWAS Central with improved news, help and information pages)

GWAS Central version 5.0 has improved news articles, extended online help (including screenshots and extra links where appropriate) and additional information related to more technical aspects of the system such as our web-services.

Release 9

March 16th, 2011 | Posted by rcf8 in StudyRelease | Uncategorized - (Comments Off on Release 9)

141 studies (HGVST569-HGVST709) from NHGRI GWAS Catalog and other sources.

Release 5

March 16th, 2011 | Posted by rcf8 in Uncategorized | WebRelease - (Comments Off on Release 5)

Improved news articles, extended online help and additional information related to more technical aspects of the system such as our web-services.

Human Phenotype Ontology (HPO) based phenotype searches.

New HGMD data released in GWAS Central

February 22nd, 2011 | Posted by rcf8 in News | Uncategorized - (Comments Off on New HGMD data released in GWAS Central)

The Human Gene Mutation Database (HGMD) contains published mutations responsible for human inherited disease. As of February 2011 a new collection of HGMD data (2010.3) are visible in the browser, within the region view.