Reports
GWAS Central reports provide summaries of data in the system. The default is to display these in HTML format (ie. as web-pages). But these report URLs also operate as web-services, through which information can be obtained in other formats using a ‘format’ parameter.
Furthermore, different formats can also be accessed using content-type negotiation (see also our search web-services).
Formats and content-types
All resources support the following formats specified in the URL: xml, text, json and yaml
Marker, phenotype and result resources also support the following RDF-based format(s) in the URL: rdfxml, turtle
Content-type negotiation (ie. using an HTTP header ‘Content-type’ value) can also be used to specify the file-format. The following content-types are recognised:
Content-type | Format returned |
---|---|
text/json | JSON |
text/xml | XML |
text/plain | text |
text/yaml | YAML |
application/rdf+xml* | RDF |
text/turtle* | Turtle |
* only recognised by marker, phenotype and result resources
Current reports
Phenotype report
http://purl.org/gwas/phen/[identifier]
Examples
http://purl.org/gwas/phen/HGVPM150?format=rdfxml
Study report
http://purl.org/gwas/st/[identifier]
Examples
http://purl.org/gwas/st/HGVST315?format=json
Marker report
http://purl.org/gwas/mkr/[identifier] http://purl.org/gwas/mkr/[datasource]:[accession]
Examples
Using GWAS Central identifier:
http://purl.org/gwas/mkr/HGVM510?format=xml
Using dbSNP accession number:
http://purl.org/gwas/mkr/dbSNP:rs699?format=xml
Result report
http://purl.org/gwas/mkr/[identifier]/results/[dataset_identifier] http://purl.org/gwas/mkr/[datasource]:[accession]/results/[dataset_identifier]
Examples
Using GWAS Central identifier:
http://purl.org/gwas/mkr/HGVM3306/results/HGVRS100?format=turtle
Using dbSNP accession number:
http://purl.org/gwas/mkr/dbSNP:rs909253/results/HGVRS100?format=turtle